Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs10540805 chr8:120871844 TAAAG/T 4.17E-7 182 13 19.3 3.73 KM Plot
ESCA rs10645294 chr6:90592634 T/TAA 8.37E-7 180 12.9 14.5 2.7 KM Plot
ESCA rs10689904 chr6:145689128 G/GTT 6.1E-5 178 13.5 12.97 7.9 KM Plot
ESCA rs10773007 chr12:123800752 G/T 1.78E-5 184 13.03 20.3 4.57 KM Plot
ESCA rs1077497 chr10:126723133 C/T 4.53E-5 184 7.87 9.07 13.38 KM Plot
ESCA rs10802467 chr1:247251735 G/A 4.68E-7 184 13.33 14.13 3.87 KM Plot
ESCA rs10846495 chr12:123760729 G/T 5.52E-8 183 13.03 20.35 2.7 KM Plot
ESCA rs10846496 chr12:123761505 G/A 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs10846499 chr12:123763385 A/G 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs10846500 chr12:123763499 C/T 2.08E-7 182 13.1 19.6 2.7 KM Plot
ESCA rs10846514 chr12:123800376 A/G 9.32E-6 184 13.03 20.3 4.57 KM Plot
ESCA rs10889453 chr1:64359353 A/G 2.58E-5 184 4.27 10.22 13.37 KM Plot
ESCA rs10955939 chr8:120870166 A/G 4.17E-7 182 13 19.3 3.73 KM Plot
ESCA rs10983892 chr9:100596150 G/C 4.84E-8 183 13.03 21.07 2.67 KM Plot
ESCA rs10983893 chr9:100596165 A/G 5.74E-8 184 13.03 19.47 2.67 KM Plot